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    Home » Breakfast Recipes » Keto Carrot Cake Muffins with Cottage Cheese

    Keto Carrot Cake Muffins with Cottage Cheese

    Published: Jan 31, 2026 by Cathy Chenard · This post may contain affiliate links. As an Amazon Associate I earn from qualifying purchases.

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    These keto-friendly, protein-packed carrot cake muffins are made with cottage cheese and have a moist, warmly spiced flavor perfect for breakfast or snacking.

    These keto carrot cake muffins are are moist, lightly sweetened, and warmly spiced with cinnamon, nutmeg, and a hint of ginger. They have that classic carrot-cake flavor without being heavy or rich, making them a tasty breakfast or afternoon snack.

    Even better, these muffins are low in carbs and have a decent amount of protein, thanks to blended cottage cheese. It helps keep the muffins moist and tender, and you won’t taste it at all.

    The recipe uses just 8 ingredients, which keeps things easy. We like to finish the muffins with a sprinkle of crushed nuts on top for a little crunch (not mixed into the batter), but you can also top with a sweet cream cheese topping (included below).

    Ingredients

    Low-fat (2% milkfat) cottage cheese: We use low-fat cottage cheese to keep the protein percentage higher, but a higher-fat version will also work.

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    Super-fine blanched almond flour: Be sure to use blanched, super-fine almond flour for the best texture; we don’t recommend coconut flour since it will dry out the muffins.

    Eggs: Eggs provide structure and help bind the batter while keeping the muffins tender.

    Finely grated carrots: Carrots add natural sweetness and moisture.

    Monk fruit sweetener with erythritol: We find that this sweetener works best in these muffins to ensure the right amount of sweetness.

    Baking powder: Baking powder helps the muffins rise and keeps them light rather than dense.

    Carrot cake spices: A warm blend of cinnamon, nutmeg, and ginger gives these muffins their cozy, classic carrot cake flavor.

    Preparation Steps

    STEP 1: Preheat the oven to 350°F and line a muffin pan with paper liners or lightly grease it. In a blender or food processor, blend the cottage cheese until completely smooth.

    STEP 2: In a large bowl, whisk together the eggs, blended cottage cheese, sweetener and extract until well combined. Stir in the finely grated carrots.

    STEP 3: Add the almond flour, baking powder, and carrot cake spices, and mix until just combined. Do not overmix.

    combining wet ingredients
    combining dry ingredients

    STEP 4: Divide the batter evenly between 16 muffin cups, filling each about ¾ full. If desired, top with crushed walnuts after after spooning into cupcake liners, not in the batter, to add crunch without weighing the muffins down.

    STEP 5: Bake for 20 to 25 minutes, or until the muffins are set in the center and a toothpick inserted comes out mostly clean. Let muffins cool in the pan for 5 to 10 minutes, then transfer to a wire rack to cool completely.

    batter in muffin tins
    Finished muffins with crushed nuts and a side of butter

    Expert Tips

    • For best results, use room-temperature eggs. To quickly get eggs to room temperature, simply run under warm water for a few minutes.
    • When combining the wet and dry ingredients, do not overmix the batter, which may result in denser muffins.
    • If desired, top with crushed walnuts after after spooning into cupcake liners, not in the batter, to add crunch without weighing the muffins down
    • After about 15 minutes of baking, we recommend checking muffins and covering with foil if becoming overly brown.
    • Since every oven heats differently, we recommend checking for doneness at 20 minutes. Simply insert a wooden or medal pick into the center. If it comes out clean or with just a few crumbs or melted chocolate, it’s done.

    How to Store

    Store the muffins in an airtight container in the refrigerator for up to 5 days. For longer storage, freeze them in a freezer-safe container for up to 3 months, then thaw in the fridge or at room temperature before serving.

    More Keto Muffin Recipes

    • High Protein Cottage Cheese Lemon Muffins
    • Keto Banana Zucchini Muffins with Almond Flour
    • Keto Pancake Mix Muffins (with Birch Benders Mix)
    • Low Carb Strawberry Muffins

    If you try this recipe, we would love to hear your feedback! Leave a comment, rate it, and tag @lowcarbsimplified on your photo of this recipe on Instagram or Facebook. We hope you enjoy this recipe as much as we do!

    Recipe

    Keto Carrot Cake Muffins with Cottage Cheese

    Low-Carb Simplified
    These keto-friendly, protein-packed carrot cake muffins are made with cottage cheese and have a moist, warmly spiced flavor perfect for breakfast or snacking.
    No ratings yet
    Print Recipe Pin Recipe
    Prep Time 15 minutes mins
    Cook Time 20 minutes mins
    Total Time 35 minutes mins
    Course Dessert
    Cuisine American
    Servings 16
    Calories 115.4 kcal

    Ingredients
      

    • 2 ¼ cups super-fine blanched almond flour
    • 1 ½ teaspoons baking soda
    • 2 teaspoons cinnamon
    • ¼ teaspoon nutmeg
    • ½ teaspoon ginger (optional)
    • 2 pinches salt
    • 1 cup carrots, finely grated
    • ¾ cup low-fat (2% milkfat) cottage cheese, blended smooth
    • ¾ cup monk fruit with erythritol (or other sweetener of choice)
    • 3 large eggs
    • 1 teaspoon vanilla extract (optional)
    • ¼ cup walnuts, finely crushed for topping (optional)

    Instructions
     

    • Preheat the oven to 350°F and line a muffin pan with paper liners or lightly grease it. In a blender or food processor, blend the cottage cheese until completely smooth.
    • In a large bowl, whisk together the eggs, blended cottage cheese, sweetener and extract until well combined. Stir in the finely grated carrots.
    • Add the almond flour, baking powder, and carrot cake spices, and mix until just combined. Do not overmix.
    • Divide the batter evenly between 16 muffin cups, filling each about ¾ full. If desired, top with crushed walnuts after after spooning into cupcake liners, not in the batter, to add crunch without weighing the muffins down.
    • Bake for 20 to 25 minutes, or until the muffins are set in the center and a toothpick inserted comes out mostly clean. Let muffins cool in the pan for 5 to 10 minutes, then transfer to a wire rack to cool completely.

    Nutrition

    Calories: 115.4kcalCarbohydrates: 13.7gProtein: 5.9gFat: 9.1gSaturated Fat: 0.5gCholesterol: 40.2mgSodium: 67.2mgFiber: 2.6gSugar: 1.8gSugar Alcohols: 9gNet Carbs: 2.1gProtein Percentage: 20%
    Tried this recipe?Let us know how it was!

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